PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2DL_54D11D5E7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 311aa    MW: 33845 Da    PI: 6.0899
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2DL_54D11D5E7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151564148
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ lv+ +++ Gg+  +W+  ++  g++R++k+c++rw++yl
  Traes_2DL_54D11D5E7.1 15 KGPWTEEEDKALVEHIQKRGGNvgSWRGLPKAAGLNRCGKSCRLRWNNYL 64
                           79***********************************************7 PP

2Myb_DNA-binding53.74.8e-1770114147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg++++eE+ l++ +++ lG++ W+tIa ++  gRt++++k++w+++
  Traes_2DL_54D11D5E7.1  70 RGNFSEEEERLIITLHASLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114
                            89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-21767IPR009057Homeodomain-like
PROSITE profilePS5129416.3231064IPR017930Myb domain
SuperFamilySSF466892.15E-2712111IPR009057Homeodomain-like
SMARTSM007174.5E-101466IPR001005SANT/Myb domain
PfamPF002491.1E-131564IPR001005SANT/Myb domain
CDDcd001672.33E-81764No hitNo description
PROSITE profilePS5129426.2565119IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2568119IPR009057Homeodomain-like
SMARTSM007175.4E-1669117IPR001005SANT/Myb domain
PfamPF002492.8E-1570114IPR001005SANT/Myb domain
CDDcd001674.39E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKALVEHI QKRGGNVGSW RGLPKAAGLN RCGKSCRLRW  60
NNYLRSDIKR GNFSEEEERL IITLHASLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ QLPPDQTNHD VNGAAAALLP EALLWAAAAA SLGGLDTGAL MQAQVLQQLL  180
QAIGSNNSTT GLIANLAAAN TLLNSSSSIV PNQMNYLQTG YLCNTSNFAE QHVVQQQLTN  240
DTSPGTSTFA AAERADQLCN TAASYNVAPA GDWSPAQEFG GLLEPMMELP GLCSLEGDSF  300
WKDILEDSYR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271511927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM1569041e-143AM156904.1 Zea mays mRNA for transcription factor MYB2 (myb2 gene).
GenBankBT0543981e-143BT054398.1 Zea mays full-length cDNA clone ZM_BFc0030L21 mRNA, complete cds.
GenBankHQ8586911e-143HQ858691.1 Zea mays clone UT1147 ZmMYB2 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.21e-136PREDICTED: transcription factor MYB39
SwissprotQ8GWP05e-65MYB39_ARATH; Transcription factor MYB39
TrEMBLW5BUJ20.0W5BUJ2_WHEAT; Uncharacterized protein
STRINGLOC_Os04g50680.11e-117(Oryza sativa Japonica Group)
STRINGBGIOSGA014443-PA1e-117(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-68myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]